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@antgonza antgonza released this 25 Nov 14:15
2025.11
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Deployed on November 25th, 2025

  • Updated qp-knight-lab-processing to add support of PacBio raw data processing that has twisted adaptors, including human-filtering using MOVI. Also, replaced flake8 for ruff. Additionally, added IsPairedEndComplete as part of the Illumina xml validation process.
  • Added a new plugin to the system: https://github.com/qiita-spots/qp-pacbio, which adds two new commands: Woltka v0.1.7, minimap2 and PacBio processing.
  • Added default workflows specific to PacBio.
  • Allowed default workflows to have multiple commands starting from a single input.
  • Now users can download public raw and biom per-preparation directly.
  • Initial changes for to support cloud environments via cloud specific endpoints; thank you @sjanssen2!

Contributors

sjanssen2
Assets 2
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