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In this page you will find our recommendations on how to processes each data type available in Qiita and the minimum processing requirements to make your data public.
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For convenience, there is an "Add Default Workflow" button for each preparation that will add the recommended workflow steps for your raw data which then you can process.
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It is important to note however that some steps it this default workflow will not work with all raw data; for example, for target gene the workflow is based on the
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It is important to note however that some steps in this default workflow will not work with all raw data; for example, for target gene the workflow is based on the
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default Earth Microbiome Project protocol and so assumes the uploaded data are multiplexed sequences with the reversed barcodes in your mapping file and index sequence
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file (<ahref="https://earthmicrobiome.org/protocols-and-standards/" target="_blank">see here</a> for more details). Thus, if the protocol does not apply to your data
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you can still use the Default Workflow, however, you should first manually process your data using the appropriate steps until you have a defined step; in our example,
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